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Description |
Recommendation Tracker
This work is hosted by SourceForge. | The Recommendation Tracker facilitates consistent standardized (XCCDF, OVAL, CCE, CPE) guidance authoring through an established format for creating, developing, and tracking all information pertinent to security guide and benchmark generation.
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X3D Service Engine
This work is hosted by java.net. | In this research, we are applying modern Service-Oriented Architecture (SOA) technologies to make complex visualizations realizable without intensive graphics programming; in fact, without writing code at all. A Visualization Service Bus is the integration of two powerful Extensible Markup Language (XML) technologies, Extensible 3D (X3D) and an Enterprise Service Bus (ESB), which allows users to integrate data and develop user defined visualizations together. Analysts use graphical interfaces to construct visual elements, assemble a dynamic scene, connect to and transform data from a variety of sources, and map scientific data to the scene. The development and implementation of this visualization architecture allows non-programmers to develop their own visualization applications for their specific needs. It will be shown that the Visualization Service Bus provides a codeless visualization programming framework by integrating X3D into an ESB.
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TUFDefender
This work is hosted by SourceForge. | TUFDefender is a software demonstration of the Time Utility Functions and Utility Accrual paradigms. It is also a framework for simulation, visualization, and game development.
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Space Communication Protocol Standards
This work is hosted by the Open Channel Foundation. | The Space Communications Protocol Standards (SCPS) specify a developmental system of international protocols for data communications between spacecraft and points on Earth. SCPS protocols are intended to make a spacecraft appear to a terrestrial computer user as just another node on the Internet. The protocols are implemented to be as interoperable as possible with other systems.
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NetEmulator
This work is hosted by the Open Channel Foundation | The NetEmulator is a Linux-based collection of open source software programs that enable a PC, or a cluster of PCs, to emulate a wireless network in which links have limited capacity and packets get lost and delayed.
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Semantic Web Framework
This work is hosted by the Open Channel Foundation. | This software implements a Web service that translates various geo-coordinate positions.
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Callisto
This work is hosted by MITRE. | Callisto is an annotation tool written in Java that supports linguistic annotation of textual sources for any Unicode-supported language. Initial development of the tool by the MITRE Corporation was funded by the U.S. government.
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Open Vulnerability and Assessment Language (OVAL®)
This work is hosted by MITRE. | Open Vulnerability and Assessment Language (OVAL®) is an international, information security, community standard to promote open and publicly available security content, and to standardize the transfer of this information across the entire spectrum of security tools and services. OVAL includes a language used to encode system details, and an assortment of content repositories held throughout the community. The language standardizes the three main steps of the assessment process: representing configuration information of systems for testing; analyzing the system for the presence of the specified machine state (vulnerability, configuration, patch state, etc.); and reporting the results of this assessment. The repositories are collections of publicly available and open content that utilize the language.
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MITRE's Softboard Movie to Flash Movie Conversion Software
This work is hosted by MITRE. | This C++ utility converts a Softboard .sbd movie file into a Shockwave Flash .swf movie file, which can also be read by QuickTime.
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| Title |
Description |
 hReader
This work is hosted by GitHub.
| hReader is a secure, patient-centric, open source mobile health data manager that provides families with all of their health information. A built-in applet framework provides hyper-personalized capabilities to engage patients with their health status and empower them to improve their health. hReader presents your family's health data in a compelling design that increases health awareness and, hopefully, will drive habits to improve health outcomes at lower total cost.
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Cypress
This work is hosted by Cypress open source software. | Cypress v2.0 is the rigorous and repeatable testing tool of Electronic Health Records (EHRs) and EHR modules in calculating Meaningful Use (MU) Stage 2 Clinical Quality Measures (CQMs). The Cypress tool is open source and freely available for use or adoption by the health IT community including EHR vendors and testing labs. Cypress v2.0 serves as the official testing tool for the 2014 EHR Certification program supported by the Office of the National Coordinator for Health IT (ONC).
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hData XML Schemas
This work is hosted by GitHub. | This project contains XML Schemas that can be used when working with hData. The following schemas are significant:
- The root document schema root.xsd. This schema describes the document that functions as a manifest in each hData Record.
- Section metadata schema section_metadata. This schema details the metadata that can be included with each section document in an hData Record.
- hData Content Profile schema hcp.xsd. This provides a method for describing sections that must appear in an hData Record
This project contains schemas for a Continuity of Care hData Content Profile.
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Nephele - Genotyping via Complete Composition Vectors and MapReduce
This work is hosted by Google. | The classic genotyping approach has been based on phylogenetic analysis, starting with a multiple sequence alignment. Genotypes are then established by expert examination of phylogenetic trees. However, such methods are suboptimal for a rapidly growing dataset, because they require significant human effort, and because they increase in computational complexity quickly with the number of sequences. This project uses a method for genotyping that does not depend on multiple sequence alignment. It uses the complete composition vector algorithm to represent each sequence in the dataset as a vector derived from its constituent k-mers, and affinity propagation clustering to group the sequences into genotypes based on a distance measure over the vectors. Our methods produce results that correlate well with expert-defined clades or genotypes, at a fraction of the computational cost of traditional phylogenetic methods.
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jCarafe for De-identification of Medical Records
This work is hosted by GitHub. | jCarafe contains a number of statistical models, the most notable being an implementation of conditional random fields for sequence modeling; it includes a variety of machine learning methods to learn the parameters of these models efficiently from human-annotated training data. The use of these machine learning algorithms allows for the rapid development of new natural language processing components such as entity extraction and de-identification systems, topic classifiers, syntactic dependency parsers and other text processing components of use in a wide variety of applications.
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Eyes First OCT Retinal Scan Classifier
This work is hosted by GitHub. | Eyes First is part of an open source research project applying image processing and data analysis techniques to retinal images to detect early signs of multiple diseases.
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Consent Management Software
This work is hosted by SourceForge. | An infrastructure that allows patients to communicate their privacy preferences to anyone maintaining health information on their behalf. These preferences indicate the situations under which the patient consents to share data (obviating the need to re-obtain consent for each transfer of data).
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Sugarbind DB Application and Source Code
This work is hosted by EXPASY. | This database provides a list of known carbohydrate sequences to which pathogenic organisms specifically adhere. The data were compiled through an exhaustive search of literature published over the past 30 years by glycobiologists, microbiologists, and medical histologists. The database allows users to search for bacteria, toxins, and viruses that bind to a particular sequence of sugars at the non-reducing terminus of an oligosaccharide. Alternatively, one can learn which glycans are ligands of adhesins (lectins) expressed by a particular species. Abstracts of primary literature are easily accessed, and a list of citations can be printed from search results.
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MIST (MITRE Identity Scrubber Toolkit) version 1.3
This work is hosted by SourceForge. | MIST is a MITRE-developed machine-learning based de-identification toolkit. The MIST toolkit makes possible the rapid tailoring of automated de-identification to particular document types and supports the transition of the de-identification software to medical end users, avoiding the need for developers to have access to original medical records.
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L32 - Lightweight C32 Implementation
This work is hosted by GitHub. | Demonstrate a way for the Department of Veterans Affairs (VA) and the Department of Defense (DoD) to accelerate health data interoperability between their departments and with external partners across the full service member and veteran lifetime. It does this by addressing some of the challenges of exchanging continuity of care information in accordance with the HITSP C32 specification. L32 is intended as one consistent, machine-interpretable implementation of the HITSP C32 specification. The HITSP C32 Specification is a standard that addresses how to exchange continuity of care information in XML format. The L32 creates a constrained version C32 in that it greatly reduces the number of options available to someone generating a C32 document and constrains module contents to allow only relevant elements. We call this XML Schema, "L32", for "Lightweight C32 Implementation". L32 includes a W3C XML Schema and two XML stylesheets used to add and remove type declarations that make the XML schema more straight-forward and better able to capture the C32 constraints.
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HL7 Structured Document Template Design Pilot With Hdata
This work is hosted by GitHub. | This repository contains code that will allow you to translate hData Records into CDA documents and vice versa for the CDA R2 Tuberculosis Follow Up Progress Note.
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Medcafe Codebase and Documentation
This work is hosted by Open Health Tools. | medCafe provides a framework to access electronic health systems through composable views of patient records. medCafe allows each user/medical professional to build customized views of individual patient records using components. Each component has its own unique capability, and new components can be built and quickly added to existing medCafe systems as needed. It’s designed to evolve as needs change and new components become available.
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popHealth Source Code Software Design Document
This work is hosted by GitHub. | popHealth automates population health quality measure reporting. It integrates with a healthcare provider's electronic health record (EHR) system to produce meaningful use quality measure reports on the provider's patient population. popHealth also provides a streamlined mechanism for reporting summary quality information to federal agencies. popHealth is an open source tool that allows healthcare providers to calculate quality measures. A quality measure is a calculation of the number of individuals in a population that meet a specific standard of care. popHealth can import patient summaries in either ASTM CCR or HITSP C32 format. popHealth will extract information from the patient summaries and calculate quality reports.
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MASTIF
This work is hosted by Sourceforge. | MASTIF is a tool that determines the assertion status (e.g., present, negated, possible) of medical problems mentioned in clinical reports. The tool leverages the functionality of an open-source medical concept extraction system and supplies crucial information needed to understand the meaning of the text.
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LAIKA
This work is hosted by Sourceforge. | Laika is an Electronic Health Records (EHR) framework that is intended to provide EHR certification and establish interoperability with Certification Commission for Health Care Information Technology (CCHIT) standards. Laika compares the ability to import and export EHR data against health informatics standards. Laika is an open source Electronic Health Record (EHR) testing framework. Laika analyzes and reports on the interoperability capabilities of EHR systems. This includes the testing for certification of EHR software products and networks. Laika is designed to verify the input and output of EHR data against the standards and criteria identified by the Certification Commission for Healthcare Information Technology (CCHIT). Since June 2008, Laika has been used by CCHIT to perform the machine-automated testing of EHR systems for interoperability.
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hHub: Android hData Client
This work is hosted by GitHub. | hHub is an Android app designed to allow for management of chronic conditions and two way communication between users and remote medical professionals. Using the hData API, it can communicate with a remote medical professional to send and receive periodic updates on the users condition. While not focused on any particular condition, it provides API that will allow client apps easily communicate with the remote servers, while only needing to worry about their particular implementation characteristics. hData is a specification for capturing, managing, and exchanging electronic health data.
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